Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009583.1 Corchorus olitorius cultivar O-4 contig09615, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11117
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.31


Found at i:7354 original size:15 final size:14

Alignment explanation


    Indices: 7330--7368  Score: 51
    Period size: 15  Copynumber: 2.7  Consensus size: 14

       7320 AAAAGTTGAG

                          
       7330 TAATAAAATAAAAT
          1 TAATAAAATAAAAT

                       *   
       7344 TAATAATAATATAAT
          1 TAATAA-AATAAAAT

                *     
       7359 TAATCAAATA
          1 TAATAAAATA

       7369 CTATCAGCAT


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  14   10  0.45
  15   12  0.55

ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33


Consensus pattern (14 bp):   
TAATAAAATAAAAT

Found at i:7499 original size:2 final size:2

Alignment explanation


    Indices: 7494--7526  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

       7484 CCTAACCCTT

                                                             
       7494 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       7527 TTCAGGCTTC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.