Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009584.1 Corchorus olitorius cultivar O-4 contig09616, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8766

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
913--982
22
3.2
22
81
0
86
52
1
30
15
1.51
1060--1201
75
1.9
76
83
4
189
46
4
25
23
1.72
1152--2313
47
24.8
46
81
10
821
47
6
20
25
1.74
1233--1311
35
2.2
35
90
2
122
44
6
17
31
1.74
1189--1530
79
4.0
81
81
9
303
44
6
20
29
1.76
1154--1393
123
1.9
125
88
2
367
43
6
19
30
1.76
1408--2293
190
4.6
192
82
8
983
48
6
20
24
1.74
1461--2293
430
1.9
429
88
3
1244
48
7
20
23
1.74
2301--2458
22
7.2
22
81
1
192
56
6
25
12
1.59
2301--2458
65
2.4
66
83
2
219
56
6
25
12
1.59
6173--6203
14
2.3
14
94
5
55
83
0
12
3
0.75
7365--7609
41
6.0
41
81
5
248
25
24
21
28
1.99

Tables:   1

The End!