Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000959.1 Corchorus olitorius cultivar O-4 contig00959, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 941

Length: 1569
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.32


Found at i:307 original size:21 final size:21

Alignment explanation


    Indices: 283--395  Score: 160
    Period size: 21  Copynumber: 5.4  Consensus size: 21

        273 CTTAGGCAAT

                                  
        283 TCCAATGAGCTT-GAATCCTTC
          1 TCCAATGAGCTTGGAA-CCTTC

                    *            
        304 TCCAATGATCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
        325 TCCAATGAACTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                                  
        346 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                                  
        367 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
        388 TCCAATGA
          1 TCCAATGA

        396 ACTTCTAGCA


Statistics
Matches: 87,  Mismatches: 3, Indels: 4
        0.93            0.03        0.04

Matches are distributed among these distances:
  20    3  0.03
  21   81  0.93
  22    3  0.03

ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC

Done.