Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009593.1 Corchorus olitorius cultivar O-4 contig09625, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5541
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26


Found at i:157 original size:2 final size:2

Alignment explanation


    Indices: 150--180  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

        140 TAATATGTAG

                                                          
        150 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

        181 TAGTGTATTC


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:4506 original size:6 final size:6

Alignment explanation


    Indices: 4495--4522  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

       4485 AAATTCTTTC

                                            
       4495 AAAAAG AAAAAG AAAAAG AAAAAG AAAA
          1 AAAAAG AAAAAG AAAAAG AAAAAG AAAA

       4523 CATTCATTTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00


Consensus pattern (6 bp):   
AAAAAG

Done.