Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009596.1 Corchorus olitorius cultivar O-4 contig09628, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17009

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
639--700
20
3.0
20
77
13
63
46
8
17
27
1.76
621--700
41
1.9
42
85
12
112
48
6
17
27
1.71
681--825
22
6.6
21
73
10
103
38
8
13
39
1.76
681--825
44
3.3
43
78
8
123
38
8
13
39
1.76
981--1141
78
2.1
78
93
0
277
34
13
0
51
1.45
12875--12917
22
2.0
22
86
9
61
23
11
20
44
1.84
13498--13543
22
2.1
22
88
8
67
60
2
0
36
1.09
16331--16391
29
2.1
30
87
3
88
42
6
3
47
1.45

Tables:   1

The End!