Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009597.1 Corchorus olitorius cultivar O-4 contig09629, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11572

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
648--727
15
5.7
15
72
24
68
32
0
15
52
1.43
609--727
54
2.1
56
90
4
188
33
0
13
52
1.47
5045--5081
19
2.0
19
94
5
67
32
0
0
67
0.91
5051--5092
19
2.2
19
86
0
57
38
2
0
59
1.10
5481--5521
19
2.2
19
86
8
57
65
2
0
31
1.05
7859--7886
9
3.1
9
100
0
56
67
21
10
0
1.20
11056--11089
14
2.6
13
90
9
52
44
8
0
47
1.34
11264--11294
4
7.8
4
100
0
62
25
0
22
51
1.48
11199--11355
77
2.0
76
89
7
237
36
6
14
43
1.70
11280--11392
59
1.9
59
90
3
181
38
6
13
41
1.69
11201--11366
79
2.1
80
90
6
259
36
6
14
43
1.70

Tables:   1

The End!