Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009600.1 Corchorus olitorius cultivar O-4 contig09632, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6030
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.33


Found at i:2416 original size:6 final size:6

Alignment explanation


    Indices: 2405--2431  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       2395 CAACTTGGTT

                                           
       2405 GGTTTG GGTTTG GGTTTG GGTTTG GGT
          1 GGTTTG GGTTTG GGTTTG GGTTTG GGT

       2432 GAACCCGGTA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48


Consensus pattern (6 bp):   
GGTTTG

Found at i:3988 original size:19 final size:19

Alignment explanation


    Indices: 3958--3997  Score: 64
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       3948 AGGTTGTCGT

                                
       3958 AAAATCAGTTTAAAAAGACA
          1 AAAATCAGTTTAAAAA-ACA

                               
       3978 AAAATCA-TTTAAAAAACA
          1 AAAATCAGTTTAAAAAACA

              
       3996 AA
          1 AA

       3998 GAAGAAAACT


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  18    5  0.25
  19    8  0.40
  20    7  0.35

ACGTcount: A:0.65, C:0.10, G:0.05, T:0.20


Consensus pattern (19 bp):   
AAAATCAGTTTAAAAAACA
Done.