Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000961.1 Corchorus olitorius cultivar O-4 contig00961, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 743

Length: 1239
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34


Found at i:761 original size:21 final size:22

Alignment explanation


    Indices: 737--780  Score: 63
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        727 TAATCTTTAA

                                  
        737 TTTCCTT-ATTTTCCTTTTTTT
          1 TTTCCTTCATTTTCCTTTTTTT

                    *    *        
        758 TTTCCTTCGTTTTTCTTTTTTT
          1 TTTCCTTCATTTTCCTTTTTTT

             
        780 T
          1 T

        781 CTTTTCTATT


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  21    7  0.35
  22   13  0.65

ACGTcount: A:0.02, C:0.18, G:0.02, T:0.77


Consensus pattern (22 bp):   
TTTCCTTCATTTTCCTTTTTTT

Found at i:808 original size:15 final size:16

Alignment explanation


    Indices: 752--811  Score: 54
    Period size: 15  Copynumber: 3.8  Consensus size: 16

        742 TTATTTTCCT

                            
        752 TTTTTTTTTC-CTTCG
          1 TTTTTTTTTCTCTTCG

                        *   *
        767 TTTTTCTTTT-TTTTCT
          1 TTTTT-TTTTCTCTTCG

                              
        783 TTTCTATTTTTCTCTTC-
          1 TTT-T-TTTTTCTCTTCG

                        
        800 TTTTTTTTTCTC
          1 TTTTTTTTTCTC

        812 CCTTTTTGGG


Statistics
Matches: 37,  Mismatches: 3, Indels: 10
        0.74            0.06        0.20

Matches are distributed among these distances:
  15   13  0.35
  16   11  0.30
  17    8  0.22
  18    5  0.14

ACGTcount: A:0.02, C:0.18, G:0.02, T:0.78


Consensus pattern (16 bp):   
TTTTTTTTTCTCTTCG
Done.