Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009615.1 Corchorus olitorius cultivar O-4 contig09647, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 939

Length: 1565
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26


Found at i:1424 original size:2 final size:2

Alignment explanation


    Indices: 1406--1563  Score: 120
    Period size: 2  Copynumber: 79.5  Consensus size: 2

       1396 TGAAGAAGAC

                   *       *                 *      *  *                * 
       1406 GA GA GC GA GA AA GA GA GA GA GA AA GA GG GG GA GA GA GA GA AA
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA

                *           *          *            *  *                  
       1448 GA GC GA GA GA GG GA GA GA TA GA GA GA GG GG GA GA GA GA GA GA
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA

                * *         *     *     *                                 
       1490 GA GC TA GA GA GG GA GG GA GG GA GA GA GA GA G- GA GA GA GA GA
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA

                      * *         *     *     *              
       1531 GA GA GA GC TA GA GA GG GA GG GA GG GA GA GA GA G
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G

       1564 TA


Statistics
Matches: 117,  Mismatches: 38, Indels: 2
        0.75            0.24        0.01

Matches are distributed among these distances:
   1    1  0.01
   2  116  0.99

ACGTcount: A:0.42, C:0.03, G:0.54, T:0.02


Consensus pattern (2 bp):   
GA

Done.