Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009616.1 Corchorus olitorius cultivar O-4 contig09648, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 891

Length: 1485
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31


Found at i:67 original size:18 final size:18

Alignment explanation


    Indices: 44--80  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

         34 CTCCTCTATC

                     *        
         44 ATGAAAACACTTCTTTTT
          1 ATGAAAACAATTCTTTTT

                        *     
         62 ATGAAAACAATTTTTTTT
          1 ATGAAAACAATTCTTTTT

             
         80 A
          1 A

         81 ATTACCCTTT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.38, C:0.11, G:0.05, T:0.46


Consensus pattern (18 bp):   
ATGAAAACAATTCTTTTT

Found at i:424 original size:16 final size:16

Alignment explanation


    Indices: 392--430  Score: 62
    Period size: 16  Copynumber: 2.4  Consensus size: 16

        382 CTTTTGATTG

                            
        392 CAAAAATCAATTTTTT
          1 CAAAAATCAATTTTTT

                             
        408 CAGAAAATCAA-TTTTT
          1 CA-AAAATCAATTTTTT

                   
        424 CAAAAAT
          1 CAAAAAT

        431 TTGGGAAACT


Statistics
Matches: 22,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  15    5  0.23
  16    9  0.41
  17    8  0.36

ACGTcount: A:0.49, C:0.13, G:0.03, T:0.36


Consensus pattern (16 bp):   
CAAAAATCAATTTTTT
Done.