Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009625.1 Corchorus olitorius cultivar O-4 contig09657, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2020
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:569 original size:22 final size:21

Alignment explanation


    Indices: 538--578  Score: 55
    Period size: 22  Copynumber: 1.9  Consensus size: 21

        528 GAAACGAAGT

                 *     *          
        538 TAAAAGGATAATTAAATAAAAA
          1 TAAAACGATAAAT-AATAAAAA

                               
        560 TAAAACGATAAATAATAAA
          1 TAAAACGATAAATAATAAA

        579 GATTCTTTTT


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21    6  0.35
  22   11  0.65

ACGTcount: A:0.68, C:0.02, G:0.07, T:0.22


Consensus pattern (21 bp):   
TAAAACGATAAATAATAAAAA
Done.