Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009628.1 Corchorus olitorius cultivar O-4 contig09660, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5617

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
252--516
102
2.6
101
84
8
339
41
8
9
40
1.67
872--1148
90
3.1
90
86
2
405
40
24
11
23
1.87
1050--1232
54
3.3
53
74
8
172
41
25
11
21
1.86
1049--1374
111
2.8
115
84
7
385
39
25
12
22
1.89
1079--1389
57
5.4
57
71
13
256
39
25
12
22
1.89
1247--1332
33
2.6
33
98
0
163
39
27
12
19
1.88
1164--1553
123
3.1
122
79
8
451
40
25
13
21
1.89
1413--1603
90
2.1
91
89
2
287
40
22
13
23
1.89
1507--1723
57
3.9
57
80
3
262
41
23
11
24
1.86
1517--1722
113
1.8
113
89
0
322
41
22
11
25
1.86
1618--1810
90
2.1
92
87
2
273
39
24
10
24
1.87
1743--1871
58
2.2
57
86
4
177
40
24
10
24
1.87
1581--1900
149
2.2
146
85
1
424
40
23
10
25
1.86
1416--1872
203
2.2
203
88
2
549
40
23
11
24
1.87
2106--2150
21
2.1
21
87
4
63
48
15
11
24
1.77
3115--3170
22
2.5
23
82
2
69
8
32
39
19
1.83
3309--3337
3
9.7
3
100
0
58
0
31
0
68
0.89
3566--3594
14
2.0
15
93
6
51
34
0
24
41
1.55
5359--5443
33
2.6
33
75
7
91
11
35
37
15
1.84

Tables:   1

The End!