Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000963.1 Corchorus olitorius cultivar O-4 contig00963, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 616

Length: 1027
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.38


Found at i:811 original size:4 final size:4

Alignment explanation


    Indices: 802--834  Score: 57
    Period size: 4  Copynumber: 8.2  Consensus size: 4

        792 TGCTGCACAG

                                               *     
        802 ATTT ATTT ATTT ATTT ATTT ATTT ATTT TTTT A
          1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT A

        835 AATGTCTTTT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   4   27  1.00

ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76


Consensus pattern (4 bp):   
ATTT

Done.