Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009631.1 Corchorus olitorius cultivar O-4 contig09663, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5075
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35


Found at i:160 original size:21 final size:22

Alignment explanation


    Indices: 124--165  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 22

        114 AATATTAAAA

                 *          *     
        124 AAAATTTATAAAATTTGAATTC
          1 AAAATATATAAAATTTAAATTC

                                 
        146 AAAATATAT-AAATTTAAATT
          1 AAAATATATAAAATTTAAATT

        166 TATTTTTAAT


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  21   10  0.56
  22    8  0.44

ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40


Consensus pattern (22 bp):   
AAAATATATAAAATTTAAATTC
Done.