Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009637.1 Corchorus olitorius cultivar O-4 contig09669, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 866

Length: 1444
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31


Found at i:1164 original size:16 final size:15

Alignment explanation


    Indices: 1138--1177  Score: 53
    Period size: 16  Copynumber: 2.5  Consensus size: 15

       1128 TACTAACTTG

                            
       1138 CTTTTTGTGTTTTCGT
          1 CTTTTT-TGTTTTCGT

                          * 
       1154 CTTTCTTTGTTTTCTT
          1 CTTT-TTTGTTTTCGT

                    
       1170 CTTTTTTG
          1 CTTTTTTG

       1178 CATTTTTGTG


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  15    4  0.18
  16   16  0.73
  17    2  0.09

ACGTcount: A:0.00, C:0.15, G:0.12, T:0.72


Consensus pattern (15 bp):   
CTTTTTTGTTTTCGT
Done.