Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009644.1 Corchorus olitorius cultivar O-4 contig09676, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40008

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26--63
19
2.0
20
90
10
62
44
10
2
42
1.52
1384--1445
31
2.0
31
87
0
88
30
19
6
43
1.76
4902--5085
22
8.5
21
71
9
102
34
14
9
40
1.79
4945--5051
44
2.4
45
80
8
123
38
14
9
37
1.79
5032--5085
21
2.5
20
76
8
54
25
18
11
44
1.83
4928--5085
65
2.4
65
78
4
158
35
15
10
38
1.82
8675--8706
14
2.3
14
94
0
55
21
3
9
65
1.35
15193--15220
5
5.6
5
100
0
56
21
17
0
60
1.36
19669--19707
2
20.0
2
89
5
62
48
0
2
48
1.15
24929--24956
14
2.0
14
100
0
56
64
14
14
7
1.48
35583--35653
29
2.5
29
88
2
108
21
36
16
25
1.94
35744--35779
13
2.8
13
95
0
63
22
19
13
44
1.86
35939--35981
18
2.4
18
84
7
61
4
25
20
48
1.69
35914--36104
47
4.1
47
86
4
269
8
23
19
48
1.77
35988--36028
18
2.3
18
91
0
64
9
19
19
51
1.74
36033--36071
18
2.2
18
86
9
53
7
28
20
43
1.79
36825--36958
47
2.9
47
83
0
160
32
32
16
18
1.93

Tables:   1

The End!