Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009655.1 Corchorus olitorius cultivar O-4 contig09687, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8172
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:310 original size:15 final size:15

Alignment explanation


    Indices: 292--320  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

        282 TGATGATGTT

                           
        292 GGGGATGATATATAC
          1 GGGGATGATATATAC

                          
        307 GGGGATGATATATA
          1 GGGGATGATATATA

        321 TGACGGAATA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.34, C:0.03, G:0.34, T:0.28


Consensus pattern (15 bp):   
GGGGATGATATATAC
Done.