Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009660.1 Corchorus olitorius cultivar O-4 contig09692, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5532
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27


Found at i:3991 original size:6 final size:6

Alignment explanation


    Indices: 3980--4017  Score: 76
    Period size: 6  Copynumber: 6.3  Consensus size: 6

       3970 TTTCCTTTGT

                                                        
       3980 CAGAAC CAGAAC CAGAAC CAGAAC CAGAAC CAGAAC CA
          1 CAGAAC CAGAAC CAGAAC CAGAAC CAGAAC CAGAAC CA

       4018 TTGCCTGTTC


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   32  1.00

ACGTcount: A:0.50, C:0.34, G:0.16, T:0.00


Consensus pattern (6 bp):   
CAGAAC

Done.