Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009662.1 Corchorus olitorius cultivar O-4 contig09694, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11421

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1194--1256
27
2.3
27
82
15
69
44
9
1
44
1.46
608--1730
565
2.0
565
87
2
1601
31
18
15
34
1.92
2331--2540
22
9.5
21
74
9
125
37
9
15
37
1.79
2362--2458
44
2.2
44
90
3
151
37
12
15
35
1.85
2327--2459
66
2.0
66
81
8
155
36
10
17
36
1.84
2556--2604
22
2.2
22
86
13
66
38
12
14
34
1.83
2636--2939
22
13.6
22
68
18
91
39
9
14
35
1.80
2791--2985
22
8.9
23
71
8
88
42
10
13
33
1.79
2819--2912
44
2.1
44
82
3
109
41
11
14
31
1.82
2812--2958
66
2.2
65
81
1
159
41
10
13
34
1.80
3083--3556
22
21.7
22
69
12
185
35
10
17
36
1.85
3260--3336
23
3.4
23
92
1
120
35
7
19
37
1.81
3342--3397
23
2.5
24
80
13
66
37
10
12
39
1.78
3613--3659
22
2.1
22
84
7
60
46
10
14
27
1.78
4669--5022
173
2.0
175
95
1
631
42
24
12
20
1.87
5004--5067
32
2.1
32
85
5
87
35
26
7
29
1.85
5761--6114
173
2.0
175
90
2
561
41
24
14
20
1.88
6099--6160
33
2.0
32
84
9
83
33
27
8
30
1.86
8764--8860
45
2.2
45
88
1
142
37
23
6
32
1.80

Tables:   1

The End!