Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009665.1 Corchorus olitorius cultivar O-4 contig09697, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6095

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
968--1015
22
2.2
22
100
0
96
39
16
22
20
1.92
977--1089
22
5.2
22
80
8
88
41
13
17
27
1.87
999--1119
22
5.5
22
77
7
104
38
12
16
32
1.86
2012--2248
76
3.1
75
86
3
314
20
34
26
18
1.96
2310--2581
102
2.7
101
91
1
427
23
23
28
24
2.00
3472--3596
53
2.3
52
84
2
151
36
24
17
21
1.94
4406--4466
22
2.8
22
87
5
88
42
11
8
37
1.71
4833--4916
18
5.0
18
68
21
65
46
21
26
5
1.74
4804--4995
47
4.1
46
82
11
221
47
19
27
6
1.73
4928--4970
18
2.4
18
88
7
61
46
18
30
4
1.69
5097--5122
13
2.0
13
100
0
52
38
23
23
15
1.92
5116--5194
28
2.8
28
84
3
86
27
18
32
20
1.96
5175--5274
49
2.0
49
84
3
130
25
18
34
23
1.96
5230--5254
13
1.9
13
100
0
50
20
16
48
16
1.82

Tables:   1

The End!