Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000967.1 Corchorus olitorius cultivar O-4 contig00967, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 625

Length: 1043
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32


Found at i:422 original size:15 final size:15

Alignment explanation


    Indices: 399--454  Score: 60
    Period size: 15  Copynumber: 3.7  Consensus size: 15

        389 CAACTTATAT

                *          
        399 CATCGGGACACTTTC
          1 CATCAGGACACTTTC

                             
        414 CATCAGGACGACTTAT-
          1 CATCAGGAC-ACTT-TC

                     *     
        430 CATCAGGACGCTTTC
          1 CATCAGGACACTTTC

                *     
        445 CATCGGGACA
          1 CATCAGGACA

        455 AAATGATTGG


Statistics
Matches: 34,  Mismatches: 4, Indels: 6
        0.77            0.09        0.14

Matches are distributed among these distances:
  14    1  0.03
  15   19  0.56
  16   13  0.38
  17    1  0.03

ACGTcount: A:0.25, C:0.30, G:0.21, T:0.23


Consensus pattern (15 bp):   
CATCAGGACACTTTC

Found at i:433 original size:16 final size:16

Alignment explanation


    Indices: 396--439  Score: 56
    Period size: 16  Copynumber: 2.8  Consensus size: 16

        386 GGACAACTTA

                   *        
        396 TATCATCGGGAC-ACT
          1 TATCATCAGGACGACT

                             
        411 T-TCCATCAGGACGACT
          1 TAT-CATCAGGACGACT

                         
        427 TATCATCAGGACG
          1 TATCATCAGGACG

        440 CTTTCCATCG


Statistics
Matches: 25,  Mismatches: 1, Indels: 5
        0.81            0.03        0.16

Matches are distributed among these distances:
  14    1  0.04
  15    9  0.36
  16   14  0.56
  17    1  0.04

ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25


Consensus pattern (16 bp):   
TATCATCAGGACGACT
Done.