Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009671.1 Corchorus olitorius cultivar O-4 contig09703, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5713
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31


Found at i:13 original size:2 final size:2

Alignment explanation


    Indices: 7--49  Score: 86
    Period size: 2  Copynumber: 21.5  Consensus size: 2

          1 TAATAA

                                                                          
          7 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

             
         49 A
          1 A

         50 AAAGAGTATC


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   41  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Found at i:1890 original size:31 final size:31

Alignment explanation


    Indices: 1855--1926  Score: 99
    Period size: 31  Copynumber: 2.3  Consensus size: 31

       1845 TTTTTGGCGC

                          **               
       1855 GACGCTTTCCATCAGGACGACTTATCAGCAA
          1 GACGCTTTCCATCAAAACGACTTATCAGCAA

                                       * **
       1886 GACGCTTTCCATCAAAACGACTTATCATCGG
          1 GACGCTTTCCATCAAAACGACTTATCAGCAA

                      
       1917 GACGCTTTCC
          1 GACGCTTTCC

       1927 GTTGGGACGA


Statistics
Matches: 36,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  31   36  1.00

ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25


Consensus pattern (31 bp):   
GACGCTTTCCATCAAAACGACTTATCAGCAA
Done.