Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009672.1 Corchorus olitorius cultivar O-4 contig09704, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2392
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.27


Found at i:66 original size:40 final size:40

Alignment explanation


    Indices: 1--174  Score: 271
    Period size: 40  Copynumber: 4.3  Consensus size: 40

                                                 *  
          1 TCCGGTGGGGAAGGGCAAACTGGGAATTTAAACAACAACT
          1 TCCGGTGGGGAAGGGCAAACTGGGAATTTAAACAACACCT

               *                       *             
         41 TCCAGTGGGGAAGGGCAAAAC-GGGAAATTAAACAACACCT
          1 TCCGGTGGGGAAGGGC-AAACTGGGAATTTAAACAACACCT

                                 *                   
         81 TCCGGTGGGGAAGGGCAAAACAGGGAATTT-AACAACACCT
          1 TCCGGTGGGGAAGGGC-AAACTGGGAATTTAAACAACACCT

                                                    
        121 TCCGGTGGGGAAGGGCAAACTGGGAATTTAAACAACACCT
          1 TCCGGTGGGGAAGGGCAAACTGGGAATTTAAACAACACCT

               *          
        161 TCCTGTGGGGAAGG
          1 TCCGGTGGGGAAGG

        175 ACATTTTAGG


Statistics
Matches: 124,  Mismatches: 7, Indels: 6
        0.91            0.05        0.04

Matches are distributed among these distances:
  39   12  0.10
  40  101  0.81
  41   11  0.09

ACGTcount: A:0.34, C:0.19, G:0.31, T:0.16


Consensus pattern (40 bp):   
TCCGGTGGGGAAGGGCAAACTGGGAATTTAAACAACACCT

Done.