Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009678.1 Corchorus olitorius cultivar O-4 contig09710, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4522

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1498--1538
22
1.9
21
85
5
55
36
12
2
48
1.54
1696--1935
22
11.1
22
71
17
98
37
15
8
38
1.78
1707--1935
44
5.3
44
72
14
163
37
14
9
38
1.78
1726--1956
22
10.7
23
72
15
106
36
15
9
38
1.80
1776--1890
60
1.9
61
85
1
160
35
14
7
41
1.75
1753--1917
82
2.0
84
81
9
196
37
15
7
40
1.75
2036--2205
22
7.8
22
70
9
98
38
10
8
42
1.71
2079--2205
44
2.9
44
76
3
123
39
10
7
42
1.68
2035--2185
66
2.3
66
79
6
155
38
11
9
40
1.74
2219--2265
21
2.3
21
77
3
51
36
19
8
36
1.82
2618--3698
540
2.0
538
90
2
1699
35
14
17
32
1.90
3614--3856
121
2.0
122
92
0
407
41
9
9
38
1.71
4450--4511
25
2.6
24
87
5
81
59
4
6
29
1.43

Tables:   1

The End!