Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009699.1 Corchorus olitorius cultivar O-4 contig09731, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4019
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.31


Found at i:3835 original size:11 final size:11

Alignment explanation


    Indices: 3819--3848  Score: 60
    Period size: 11  Copynumber: 2.7  Consensus size: 11

       3809 ATGTATGGTT

                       
       3819 TTTTTTTTTTA
          1 TTTTTTTTTTA

                       
       3830 TTTTTTTTTTA
          1 TTTTTTTTTTA

                    
       3841 TTTTTTTT
          1 TTTTTTTT

       3849 CCTGGGTTCT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   19  1.00

ACGTcount: A:0.07, C:0.00, G:0.00, T:0.93


Consensus pattern (11 bp):   
TTTTTTTTTTA

Done.