Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009703.1 Corchorus olitorius cultivar O-4 contig09735, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6762
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.29


Found at i:406 original size:18 final size:17

Alignment explanation


    Indices: 383--418  Score: 54
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        373 CTCCTCTTGC

                              
        383 ATGAAAACACTTTTTTTT
          1 ATGAAAACA-TTTTTTTT

                   *         
        401 ATGAAAATATTTTTTTT
          1 ATGAAAACATTTTTTTT

             
        418 A
          1 A

        419 ATTACCCTTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  17    9  0.53
  18    8  0.47

ACGTcount: A:0.36, C:0.06, G:0.06, T:0.53


Consensus pattern (17 bp):   
ATGAAAACATTTTTTTT
Done.