Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01009705.1 Corchorus olitorius cultivar O-4 contig09737, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3890
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Found at i:474 original size:26 final size:28
Alignment explanation
Indices: 435--497 Score: 78
Period size: 26 Copynumber: 2.3 Consensus size: 28
425 TTGTTTTTTT
*
435 TTAAAT-ATATTTTTAAAT-TTCCATTA
1 TTAAATAATATTTTTAAATATTCCACTA
*
461 TTAAATAATA-TTTTAATTATTCCACTA
1 TTAAATAATATTTTTAAATATTCCACTA
488 TTAAAATAAT
1 TT-AAATAAT
498 GGAAATTTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 13 0.41
27 12 0.38
28 7 0.22
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (28 bp):
TTAAATAATATTTTTAAATATTCCACTA
Found at i:1158 original size:22 final size:22
Alignment explanation
Indices: 1133--1207 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 22
1123 GGTTACTAAT
*
1133 ATTTCATGGGGAGGTTATCAAA
1 ATTTCATAGGGAGGTTATCAAA
* *
1155 ATTTCATAGTGTGGTTATCAAA
1 ATTTCATAGGGAGGTTATCAAA
** ** *
1177 ACTTTTTTATTGTGGTTATCAAA
1 A-TTTCATAGGGAGGTTATCAAA
1200 ATTTCATA
1 ATTTCATA
1208 TGAAGGTCAT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
22 25 0.57
23 19 0.43
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (22 bp):
ATTTCATAGGGAGGTTATCAAA
Found at i:1194 original size:23 final size:22
Alignment explanation
Indices: 1145--1499 Score: 98
Period size: 22 Copynumber: 16.0 Consensus size: 22
1135 TTCATGGGGA
1145 GGTTATCAAAATTTCATAGTGT
1 GGTTATCAAAATTTCATAGTGT
** *
1167 GGTTATCAAAACTTTTTTATTGT
1 GGTTATCAAAA-TTTCATAGTGT
*
1190 GGTTATCAAAATTTCATA-TGAA
1 GGTTATCAAAATTTCATAGTG-T
* * **
1212 GGTCAT-AAAAGTCTCAATTTCA-TAAA
1 GGTTATCAAAA-TTTC-A--T-AGT-GT
* * * * **
1238 GATTACCAACATTTGATAG-AA
1 GGTTATCAAAATTTCATAGTGT
* * *
1259 GGTTACCA-AATCTCATAGAGT
1 GGTTATCAAAATTTCATAGTGT
* * *
1280 GATTATCGAAATTTCATAGAGAT
1 GGTTATCAAAATTTCATAGTG-T
* *
1303 CGGATAATCAAAATTT-ATAG-GAA
1 -GG-TTATCAAAATTTCATAGTG-T
* *
1326 GATTATCAAAATTTCATAGCGT
1 GGTTATCAAAATTTCATAGTGT
* * * *
1348 TGTTATCAAAATTTCAAAGCGA
1 GGTTATCAAAATTTCATAGTGT
* *
1370 GGTTATCAAAATTACATAATGT
1 GGTTATCAAAATTTCATAGTGT
* * *
1392 GATTATCAAAATTT-TTAGAG-
1 GGTTATCAAAATTTCATAGTGT
* * * * * *
1412 GAATCAACAAAATTTTATAGAGA
1 G-GTTATCAAAATTTCATAGTGT
** *
1435 GGTTATCAAAATTTCATAAAGA
1 GGTTATCAAAATTTCATAGTGT
* * *
1457 GGTTATCAAATTTTCAAAATGT
1 GGTTATCAAAATTTCATAGTGT
* * *
1479 GATTACCAAAATTTTATAGTG
1 GGTTATCAAAATTTCATAGTG
1500 GTATTTCTGG
Statistics
Matches: 248, Mismatches: 65, Indels: 40
0.70 0.18 0.11
Matches are distributed among these distances:
20 8 0.03
21 45 0.18
22 141 0.57
23 26 0.10
24 5 0.02
25 12 0.05
26 8 0.03
27 3 0.01
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.35
Consensus pattern (22 bp):
GGTTATCAAAATTTCATAGTGT
Found at i:1296 original size:22 final size:23
Alignment explanation
Indices: 1266--1497 Score: 132
Period size: 22 Copynumber: 10.5 Consensus size: 23
1256 GAAGGTTACC
* *
1266 AAATCTCATAGAG-TGATTATCG
1 AAATTTCATAGAGATGATTATCA
*
1288 AAATTTCATAGAGATCGGATAATCA
1 AAATTTCATAGAGAT--GATTATCA
*
1313 AAATTT-ATAG-GAAGATTATCA
1 AAATTTCATAGAGATGATTATCA
* *
1334 AAATTTCATAGCGTTG-TTATCA
1 AAATTTCATAGAGATGATTATCA
* * *
1356 AAATTTCAAAGCGA-GGTTATCA
1 AAATTTCATAGAGATGATTATCA
*
1378 AAATTACATA-ATG-TGATTATCA
1 AAATTTCATAGA-GATGATTATCA
* * *
1400 AAATTT-TTAGAG--GAATCAACA
1 AAATTTCATAGAGATG-ATTATCA
* *
1421 AAATTTTATAGAGA-GGTTATCA
1 AAATTTCATAGAGATGATTATCA
* *
1443 AAATTTCATAAAGA-GGTTATCA
1 AAATTTCATAGAGATGATTATCA
* * *
1465 AATTTTCA-AAATG-TGATTACCA
1 AAATTTCATAGA-GATGATTATCA
*
1487 AAATTTTATAG
1 AAATTTCATAG
1498 TGGTATTTCT
Statistics
Matches: 166, Mismatches: 29, Indels: 29
0.74 0.13 0.13
Matches are distributed among these distances:
20 1 0.01
21 31 0.19
22 111 0.67
23 7 0.04
24 4 0.02
25 12 0.07
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.34
Consensus pattern (23 bp):
AAATTTCATAGAGATGATTATCA
Found at i:1626 original size:22 final size:21
Alignment explanation
Indices: 1598--1785 Score: 127
Period size: 22 Copynumber: 8.8 Consensus size: 21
1588 TTAGGGAGGA
1598 TATCAAAATTTCATATGAAGGT
1 TATCAAAATTTCATA-GAAGGT
*
1620 TATCAAAATTTCATAGTTTA-GT
1 TATCAAAATTTCATAG--AAGGT
* *
1642 TTTCAAAATTTCATAAAAGGGT
1 TATCAAAATTTCATAGAA-GGT
* *
1664 TATCAAAATTTCATAGTATGT
1 TATCAAAATTTCATAGAAGGT
*
1685 AGATCAAAATTTCAT---AGGT
1 -TATCAAAATTTCATAGAAGGT
* * *
1704 TATCAAATTTTCATAGTATGT
1 TATCAAAATTTCATAGAAGGT
* *
1725 AGATCAAAATTTCATAAAGAGGT
1 -TATCAAAATTTCATAGA-AGGT
*
1748 TATCAAATTTTCA-A-AATGTGAT
1 TATCAAAATTTCATAGAA-G-G-T
*
1770 TACCAAAATTTCATAG
1 TATCAAAATTTCATAG
1786 TGGTATTTCT
Statistics
Matches: 129, Mismatches: 22, Indels: 28
0.72 0.12 0.16
Matches are distributed among these distances:
18 12 0.09
19 4 0.03
20 3 0.02
21 8 0.06
22 97 0.75
23 5 0.04
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (21 bp):
TATCAAAATTTCATAGAAGGT
Found at i:1777 original size:84 final size:83
Alignment explanation
Indices: 1616--1785 Score: 206
Period size: 84 Copynumber: 2.0 Consensus size: 83
1606 TTTCATATGA
* *
1616 AGGTTATCAAAATTTCATAGTTTAGTTTTCAAAATTTCATAAAAGGGTTATCAAAATTTCATAGT
1 AGGTTATCAAAATTTCATAGTTTAG-TATCAAAATTTCATAAAAGGGTTATCAAAATTTCATAGA
1681 ATGTAGATCAAAATTTCAT
65 ATGTAGATCAAAATTTCAT
* *
1700 AGGTTATCAAATTTTCATAGTATGTAG-ATCAAAATTTCAT-AAAGAGGTTATCAAATTTTCA-A
1 AGGTTATCAAAATTTCATAGT-T-TAGTATCAAAATTTCATAAAAG-GGTTATCAAAATTTCATA
1762 -AATGT-GATTACCAAAATTTCAT
63 GAATGTAGA-T--CAAAATTTCAT
1784 AG
1 AG
1786 TGGTATTTCT
Statistics
Matches: 76, Mismatches: 4, Indels: 12
0.83 0.04 0.13
Matches are distributed among these distances:
81 2 0.03
82 5 0.07
83 5 0.07
84 60 0.79
85 1 0.01
86 3 0.04
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (83 bp):
AGGTTATCAAAATTTCATAGTTTAGTATCAAAATTTCATAAAAGGGTTATCAAAATTTCATAGAA
TGTAGATCAAAATTTCAT
Found at i:1784 original size:44 final size:43
Alignment explanation
Indices: 1599--1760 Score: 208
Period size: 44 Copynumber: 3.8 Consensus size: 43
1589 TAGGGAGGAT
* *
1599 ATCAAAATTTCATATGAAGGTTATCAAAATTTCATAGT-T-TAG
1 ATCAAAATTTCATA-AAAGGTTATCAAATTTTCATAGTATGTAG
* *
1641 TTTTCAAAATTTCATAAAAGGGTTATCAAAATTTCATAGTATGTAG
1 --ATCAAAATTTCATAAAA-GGTTATCAAATTTTCATAGTATGTAG
1687 ATCAAAATTTCAT---AGGTTATCAAATTTTCATAGTATGTAG
1 ATCAAAATTTCATAAAAGGTTATCAAATTTTCATAGTATGTAG
1727 ATCAAAATTTCATAAAGAGGTTATCAAATTTTCA
1 ATCAAAATTTCATAAA-AGGTTATCAAATTTTCA
1761 AAATGTGATT
Statistics
Matches: 107, Mismatches: 4, Indels: 14
0.86 0.03 0.11
Matches are distributed among these distances:
40 38 0.36
41 1 0.01
43 2 0.02
44 62 0.58
45 1 0.01
46 3 0.03
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (43 bp):
ATCAAAATTTCATAAAAGGTTATCAAATTTTCATAGTATGTAG
Found at i:1937 original size:287 final size:288
Alignment explanation
Indices: 1439--1989 Score: 1050
Period size: 287 Copynumber: 1.9 Consensus size: 288
1429 TAGAGAGGTT
*
1439 ATCAAAATTTCATAAAGAGGTTATCAAATTTTCAAAATGTGATTACCAAAATTTTATAGTGGTAT
1 ATCAAAATTTCATAAAGAGGTTATCAAATTTTCAAAATGTGATTACCAAAATTTCATAGTGGTAT
1504 TTCTGGGGAGGTTATCAAAATTTCATAGTATGGTTACCAAATTAGGAAAGGTTATTAAACTTTTA
66 TTCTGGGGAGGTTATCAAAATTTCATAGTATGGTTACCAAATTAGGAAAGGTTATTAAACTTTTA
* **
1569 TTATGGAGTAATCAAAATTTTAGGGAGGATATCAAAATTTCATATGAAGGTTATCAAAATTTCAT
131 TTATGGAGTAATCAAAATTTCAGGGAGGATATCAAAATTTCATATGAAAATTATCAAAATTTCAT
1634 AGTTTAGTTTTCAAAATTTCATAAAAGGGTTATCAAAATTTCATAGTATGTAGATCAAAATTTCA
196 AGTTTAGTTTTCAAAATTTCATAAAAGGGTTATCAAAATTTCATAGTATGTAGATCAAAATTTCA
1699 TAGGTTATCAAATTTTCATAGTATGTAG
261 TAGGTTATCAAATTTTCATAGTATGTAG
1727 ATCAAAATTTCATAAAGAGGTTATCAAATTTTCAAAATGTGATTACCAAAATTTCATAGTGGTAT
1 ATCAAAATTTCATAAAGAGGTTATCAAATTTTCAAAATGTGATTACCAAAATTTCATAGTGGTAT
1792 TTCTGGGGAGGTTATCAAAATTTCATAGTATGGTTACCAAATTAGG-AAGGTTATTAAACTTTTA
66 TTCTGGGGAGGTTATCAAAATTTCATAGTATGGTTACCAAATTAGGAAAGGTTATTAAACTTTTA
1856 TTATGGAGTAATCAAAATTTCAGGGAGGATATCAAAATTTCATATGAAAATTATCAAAATTTCAT
131 TTATGGAGTAATCAAAATTTCAGGGAGGATATCAAAATTTCATATGAAAATTATCAAAATTTCAT
*
1921 AGTTTAGTTTTCAAAATTTCATAAAAGGGTTATCAAAATTTTATAGTATGTAGATCAAAATTTCA
196 AGTTTAGTTTTCAAAATTTCATAAAAGGGTTATCAAAATTTCATAGTATGTAGATCAAAATTTCA
1986 TAGG
261 TAGG
1990 GAGATTAACA
Statistics
Matches: 258, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
287 148 0.57
288 110 0.43
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (288 bp):
ATCAAAATTTCATAAAGAGGTTATCAAATTTTCAAAATGTGATTACCAAAATTTCATAGTGGTAT
TTCTGGGGAGGTTATCAAAATTTCATAGTATGGTTACCAAATTAGGAAAGGTTATTAAACTTTTA
TTATGGAGTAATCAAAATTTCAGGGAGGATATCAAAATTTCATATGAAAATTATCAAAATTTCAT
AGTTTAGTTTTCAAAATTTCATAAAAGGGTTATCAAAATTTCATAGTATGTAGATCAAAATTTCA
TAGGTTATCAAATTTTCATAGTATGTAG
Found at i:2001 original size:22 final size:22
Alignment explanation
Indices: 1866--2337 Score: 156
Period size: 22 Copynumber: 21.6 Consensus size: 22
1856 TTATGGAGTA
1866 ATCAAAATTTC--AGGGAGGA-T
1 ATCAAAATTTCATAGGGA-GATT
* * *
1886 ATCAAAATTTCATATGAAAATT
1 ATCAAAATTTCATAGGGAGATT
**
1908 ATCAAAATTTCATAGTTTAG-TT
1 ATCAAAATTTCATAG-GGAGATT
* *
1930 TTCAAAATTTCATAAAAGG-G-TT
1 ATCAAAATTTCAT--AGGGAGATT
* * *
1952 ATCAAAATTTTATA-GTATG-TAG
1 ATCAAAATTTCATAGGGA-GAT-T
1974 ATCAAAATTTCATAGGGAGATT
1 ATCAAAATTTCATAGGGAGATT
* ** *
1996 AACAAAATTTCATAATGAGGTT
1 ATCAAAATTTCATAGGGAGATT
* *** *
2018 ATAAAAAAAAACATAGGAAGATT
1 AT-CAAAATTTCATAGGGAGATT
2041 ATCAAAATTT-AT----AG-TT
1 ATCAAAATTTCATAGGGAGATT
* * *
2057 ATCAAGATTTCATAAGGAGGTT
1 ATCAAAATTTCATAGGGAGATT
* *
2079 ATCAAAATTTTATAGGGAGGTTT
1 ATCAAAATTTCATAGGGA-GATT
* ** *
2102 ATCAAAATTTTATAAGAAAGTTT
1 ATCAAAATTTCAT-AGGGAGATT
*
2125 ATCAAAATTTCATAGCGAGATT
1 ATCAAAATTTCATAGGGAGATT
* * * *
2147 ATCACAATTTCAGAGTGTGATT
1 ATCAAAATTTCATAGGGAGATT
*
2169 A-CTAACAA-TTCATATGGAGATT
1 ATC-AA-AATTTCATAGGGAGATT
* * * ** * *
2191 TTTAAATTTTCATAACGTGGTT
1 ATCAAAATTTCATAGGGAGATT
* * * *
2213 ATTAATATATT-ATATGGAGGTT
1 ATCAAAAT-TTCATAGGGAGATT
* * *
2235 ATCAACATCTCATAGTGTTAG-TT
1 ATCAAAATTTCATAG-G-GAGATT
*
2258 ATCAAAATTTCATTGGGA-AGTT
1 ATCAAAATTTCATAGGGAGA-TT
* *
2280 ATCAAAATTTCATAGTGAGGTCT
1 ATCAAAATTTCATAGGGAGAT-T
* * * *
2303 -TCAAAATTCCTTAGAGAGGTT
1 ATCAAAATTTCATAGGGAGATT
*
2324 AACAAAATTTCATA
1 ATCAAAATTTCATA
2338 ATAAGGTTAA
Statistics
Matches: 333, Mismatches: 86, Indels: 64
0.69 0.18 0.13
Matches are distributed among these distances:
16 11 0.03
17 4 0.01
19 1 0.00
20 12 0.04
21 12 0.04
22 217 0.65
23 70 0.21
24 6 0.02
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (22 bp):
ATCAAAATTTCATAGGGAGATT
Found at i:2107 original size:23 final size:23
Alignment explanation
Indices: 2055--2138 Score: 107
Period size: 23 Copynumber: 3.7 Consensus size: 23
2045 AAATTTATAG
*
2055 TTATCAAGATTTCATAAGGAGG-
1 TTATCAAAATTTCATAAGGAGGT
* *
2077 TTATCAAAATTTTATAGGGAGGT
1 TTATCAAAATTTCATAAGGAGGT
* * *
2100 TTATCAAAATTTTATAAGAAAGT
1 TTATCAAAATTTCATAAGGAGGT
2123 TTATCAAAATTTCATA
1 TTATCAAAATTTCATA
2139 GCGAGATTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
22 19 0.35
23 35 0.65
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.38
Consensus pattern (23 bp):
TTATCAAAATTTCATAAGGAGGT
Found at i:2149 original size:45 final size:45
Alignment explanation
Indices: 2055--2158 Score: 120
Period size: 45 Copynumber: 2.3 Consensus size: 45
2045 AAATTTATAG
* * * * *
2055 TTATCAAGATTTCATAAGGAGGTTATCAAAATTTTATAGGGAGGT
1 TTATCAAAATTTCATAAGAAGGTTATCAAAATTTCATAGCGAGGA
* *
2100 TTATCAAAATTTTATAAGAAAGTTTATCAAAATTTCATAGCGA-GA
1 TTATCAAAATTTCATAAG-AAGGTTATCAAAATTTCATAGCGAGGA
*
2145 TTATCACAATTTCA
1 TTATCAAAATTTCA
2159 GAGTGTGATT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
45 29 0.59
46 20 0.41
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (45 bp):
TTATCAAAATTTCATAAGAAGGTTATCAAAATTTCATAGCGAGGA
Found at i:2344 original size:22 final size:22
Alignment explanation
Indices: 2319--2426 Score: 74
Period size: 22 Copynumber: 4.9 Consensus size: 22
2309 TTCCTTAGAG
2319 AGGTTAACAAAATTTCATAATA
1 AGGTTAACAAAATTTCATAATA
* *
2341 AGGTTAAAAAAATTTTATAA-A
1 AGGTTAACAAAATTTCATAATA
* ** * *
2362 AAGTCTGTCAAAATTCCATAGTA
1 AGGT-TAACAAAATTTCATAATA
*** ** **
2385 TCATTATTAAAATTTCATAGGA
1 AGGTTAACAAAATTTCATAATA
2407 AGGTTAACAAAATTTCATAA
1 AGGTTAACAAAATTTCATAA
2427 GGAGGTCATC
Statistics
Matches: 62, Mismatches: 22, Indels: 4
0.70 0.25 0.05
Matches are distributed among these distances:
21 4 0.06
22 56 0.90
23 2 0.03
ACGTcount: A:0.47, C:0.09, G:0.10, T:0.33
Consensus pattern (22 bp):
AGGTTAACAAAATTTCATAATA
Found at i:2439 original size:66 final size:65
Alignment explanation
Indices: 2254--2440 Score: 166
Period size: 66 Copynumber: 2.8 Consensus size: 65
2244 TCATAGTGTT
* * * *
2254 AGTTATCAAAATTTCATTGGGAA-GTTATCAAAATTTCAT-AGTGAGGTCTTCAAAATTCCTTAG
1 AGTTATCAAAATTTCA-TAGGAAGGTTAACAAAATTTCATAAG-GAGGTCATCAAAATTCCATAG
*
2317 AG
64 AC
* ** * * * * *
2319 AGGTTAACAAAATTTCATAATAAGGTTAAAAAAATTTTATAA-AAAGTCTGTCAAAATTCCATAG
1 A-GTTATCAAAATTTCATAGGAAGGTTAACAAAATTTCATAAGGAGGTC-ATCAAAATTCCATAG
2383 TATC
64 -A-C
*
2387 A-TTATTAAAATTTCATAGGAAGGTTAACAAAATTTCATAAGGAGGTCATCAAAA
1 AGTTATCAAAATTTCATAGGAAGGTTAACAAAATTTCATAAGGAGGTCATCAAAA
2441 ATAGTGTAAT
Statistics
Matches: 94, Mismatches: 21, Indels: 13
0.73 0.16 0.10
Matches are distributed among these distances:
65 8 0.09
66 79 0.84
67 6 0.06
68 1 0.01
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.33
Consensus pattern (65 bp):
AGTTATCAAAATTTCATAGGAAGGTTAACAAAATTTCATAAGGAGGTCATCAAAATTCCATAGAC
Found at i:2442 original size:23 final size:22
Alignment explanation
Indices: 2393--2440 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
2383 TATCATTATT
*
2393 AAAATTTCATAGGAAGGTTAAC
1 AAAATTTCATAGGAAGGTCAAC
*
2415 AAAATTTCATAAGG-AGGTCATC
1 AAAATTTCAT-AGGAAGGTCAAC
2437 AAAA
1 AAAA
2441 ATAGTGTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 20 0.87
23 3 0.13
ACGTcount: A:0.48, C:0.10, G:0.17, T:0.25
Consensus pattern (22 bp):
AAAATTTCATAGGAAGGTCAAC
Found at i:3246 original size:16 final size:16
Alignment explanation
Indices: 3225--3277 Score: 72
Period size: 16 Copynumber: 3.3 Consensus size: 16
3215 GCGGGCTCGA
3225 GTTCGGGTATTTTCGG
1 GTTCGGGTATTTTCGG
*
3241 GTTCGGGT-TATGTCGG
1 GTTCGGGTAT-TTTCGG
*
3257 ATTCGGGTATTTTCGG
1 GTTCGGGTATTTTCGG
3273 GTTCG
1 GTTCG
3278 TGCTCGGGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
15 1 0.03
16 29 0.94
17 1 0.03
ACGTcount: A:0.08, C:0.13, G:0.38, T:0.42
Consensus pattern (16 bp):
GTTCGGGTATTTTCGG
Done.