Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009708.1 Corchorus olitorius cultivar O-4 contig09740, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3833
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.29


Found at i:2035 original size:6 final size:6

Alignment explanation


    Indices: 2024--2053  Score: 51
    Period size: 6  Copynumber: 4.8  Consensus size: 6

       2014 ATAGAGTAAT

                                              
       2024 AAAAGA AAAAGA AAGAAGA AAAAGA AAAAG
          1 AAAAGA AAAAGA AA-AAGA AAAAGA AAAAG

       2054 GTTAGAATTA


Statistics
Matches: 23,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
   6   17  0.74
   7    6  0.26

ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00


Consensus pattern (6 bp):   
AAAAGA

Found at i:2044 original size:13 final size:13

Alignment explanation


    Indices: 2026--2050  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       2016 AGAGTAATAA

                         
       2026 AAGAAAAAGAAAG
          1 AAGAAAAAGAAAG

                        
       2039 AAGAAAAAGAAA
          1 AAGAAAAAGAAA

       2051 AAGGTTAGAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00


Consensus pattern (13 bp):   
AAGAAAAAGAAAG
Done.