Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009711.1 Corchorus olitorius cultivar O-4 contig09743, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9426
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31


Found at i:8382 original size:22 final size:23

Alignment explanation


    Indices: 8339--8383  Score: 74
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       8329 AACTCCTCCC

                          *        
       8339 CGCAGGAAGTCTCCTCTCAATCA
          1 CGCAGGAAGTCTCCGCTCAATCA

                                   
       8362 CGCAGGAAGTCT-CGCTCAATCA
          1 CGCAGGAAGTCTCCGCTCAATCA

       8384 TCAGCTCCTC


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  22    9  0.43
  23   12  0.57

ACGTcount: A:0.27, C:0.33, G:0.20, T:0.20


Consensus pattern (23 bp):   
CGCAGGAAGTCTCCGCTCAATCA
Done.