Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009712.1 Corchorus olitorius cultivar O-4 contig09744, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4437
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32


Found at i:199 original size:16 final size:15

Alignment explanation


    Indices: 178--217  Score: 53
    Period size: 15  Copynumber: 2.6  Consensus size: 15

        168 TTACTTTGCT

                            
        178 TTGTTTTCTAGTTTAA
          1 TTGTTTTCT-GTTTAA

                   *       
        194 TTGTTTTATGTTTAA
          1 TTGTTTTCTGTTTAA

               *     
        209 TTGCTTTCT
          1 TTGTTTTCT

        218 TTCAACCTCT


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  15   13  0.62
  16    8  0.38

ACGTcount: A:0.15, C:0.07, G:0.12, T:0.65


Consensus pattern (15 bp):   
TTGTTTTCTGTTTAA

Done.