Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009715.1 Corchorus olitorius cultivar O-4 contig09747, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6104
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31


Found at i:2984 original size:10 final size:10

Alignment explanation


    Indices: 2969--2998  Score: 60
    Period size: 10  Copynumber: 3.0  Consensus size: 10

       2959 TTAGGACTAG

                      
       2969 AAGCGGGAAT
          1 AAGCGGGAAT

                      
       2979 AAGCGGGAAT
          1 AAGCGGGAAT

                      
       2989 AAGCGGGAAT
          1 AAGCGGGAAT

       2999 TAGATATTTC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   20  1.00

ACGTcount: A:0.40, C:0.10, G:0.40, T:0.10


Consensus pattern (10 bp):   
AAGCGGGAAT
Done.