Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009717.1 Corchorus olitorius cultivar O-4 contig09749, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2732
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34


Found at i:517 original size:93 final size:93

Alignment explanation


    Indices: 358--543  Score: 336
    Period size: 93  Copynumber: 2.0  Consensus size: 93

        348 TCATTCCCCA

                   *   *                                                     
        358 TTCCCATTCCCGTACCCCGAATAATTCCACATCCCCGTCCCCGTCGAGGCGGGGAATCGGATTCC
          1 TTCCCATCCCCATACCCCGAATAATTCCACATCCCCGTCCCCGTCGAGGCGGGGAATCGGATTCC

                        *               
        423 TCACCAGACGGGGACAATTGACATCCCT
         66 TCACCAGACGGGAACAATTGACATCCCT

                             *                                               
        451 TTCCCATCCCCATACCCTGAATAATTCCACATCCCCGTCCCCGTCGAGGCGGGGAATCGGATTCC
          1 TTCCCATCCCCATACCCCGAATAATTCCACATCCCCGTCCCCGTCGAGGCGGGGAATCGGATTCC

                                        
        516 TCACCAGACGGGAACAATTGACATCCCT
         66 TCACCAGACGGGAACAATTGACATCCCT

        544 ACGTGAAAGT


Statistics
Matches: 89,  Mismatches: 4, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  93   89  1.00

ACGTcount: A:0.23, C:0.38, G:0.19, T:0.20


Consensus pattern (93 bp):   
TTCCCATCCCCATACCCCGAATAATTCCACATCCCCGTCCCCGTCGAGGCGGGGAATCGGATTCC
TCACCAGACGGGAACAATTGACATCCCT
Done.