Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009723.1 Corchorus olitorius cultivar O-4 contig09755, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4596
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34


Found at i:2491 original size:23 final size:25

Alignment explanation


    Indices: 2460--2507  Score: 64
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       2450 ATCCGAACCC

                                     
       2460 AACCCAA-CC-TAAAACCAAAAATT
          1 AACCCAACCCTTAAAACCAAAAATT

                *        *           
       2483 AACCGAACCCTTATAACCAAAAATT
          1 AACCCAACCCTTAAAACCAAAAATT

       2508 TCCTTAACCT


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  23    6  0.29
  24    2  0.10
  25   13  0.62

ACGTcount: A:0.52, C:0.29, G:0.02, T:0.17


Consensus pattern (25 bp):   
AACCCAACCCTTAAAACCAAAAATT
Done.