Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009725.1 Corchorus olitorius cultivar O-4 contig09757, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7847

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1669--1706
5
7.8
5
82
5
51
73
26
0
0
0.83
2184--3047
40
21.0
40
76
11
404
35
19
27
17
1.94
2193--3047
81
10.4
80
80
7
437
35
19
27
17
1.94
2193--2803
127
4.9
123
78
7
444
35
19
28
16
1.94
2573--3004
41
10.6
41
82
7
495
37
21
25
15
1.93
2559--3047
163
3.0
161
85
3
633
36
21
26
15
1.93
2559--3047
81
6.0
81
88
2
626
36
21
26
15
1.93
4103--4235
50
2.7
50
89
2
189
35
15
6
42
1.74
5099--5182
41
2.0
41
100
0
168
14
27
9
48
1.74
6241--6280
20
2.0
20
90
0
62
40
22
12
25
1.89
7012--7093
26
3.2
25
66
27
64
9
37
36
15
1.81
7000--7121
51
2.4
51
88
0
181
9
38
38
13
1.77
7176--7251
6
12.8
6
78
14
70
80
0
17
2
0.83
7185--7272
21
4.2
20
78
16
81
77
1
19
2
0.94
7186--7272
20
4.2
20
79
15
81
77
1
19
2
0.95

Tables:   1

The End!