Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009726.1 Corchorus olitorius cultivar O-4 contig09758, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3771
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.31


Found at i:3590 original size:2 final size:2

Alignment explanation


    Indices: 3583--3619  Score: 74
    Period size: 2  Copynumber: 18.5  Consensus size: 2

       3573 AGATAGCAAG

                                                                   
       3583 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       3620 CACACACACA


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.