Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000973.1 Corchorus olitorius cultivar O-4 contig00973, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1085
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:916 original size:31 final size:31

Alignment explanation


    Indices: 878--1013  Score: 172
    Period size: 31  Copynumber: 4.5  Consensus size: 31

        868 TTAGACTAGT

                                     *     
        878 TGCTCAAATAAGGGCCTAACGTTTGTCAAAA
          1 TGCTCAAATAAGGGCCTAACGTTTGCCAAAA

                                           
        909 TGCTCAAATAAGGGCCTAACGTTTGCCAAAA
          1 TGCTCAAATAAGGGCCTAACGTTTGCCAAAA

                       *       *       *  **
        940 TGCTCAAATAAAGGCCTGATC-TTT--TAATT
          1 TGCTCAAATAAGGGCCT-AACGTTTGCCAAAA

                                            
        969 TGGC-CAAATAAGGGCCTAACGTTTGCCAAAA
          1 T-GCTCAAATAAGGGCCTAACGTTTGCCAAAA

                          
       1000 TGCTCAAATAAGGG
          1 TGCTCAAATAAGGG

       1014 TCTGGCATCG


Statistics
Matches: 88,  Mismatches: 11, Indels: 12
        0.79            0.10        0.11

Matches are distributed among these distances:
  28    2  0.02
  29   18  0.20
  30    4  0.05
  31   62  0.70
  32    2  0.02

ACGTcount: A:0.35, C:0.20, G:0.20, T:0.26


Consensus pattern (31 bp):   
TGCTCAAATAAGGGCCTAACGTTTGCCAAAA
Done.