Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009730.1 Corchorus olitorius cultivar O-4 contig09762, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8550
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34


Found at i:187 original size:35 final size:35

Alignment explanation


    Indices: 141--215  Score: 141
    Period size: 35  Copynumber: 2.1  Consensus size: 35

        131 TTATATAAAC

                                               
        141 GAACACTTAAATGAACAATAAACGAGCCTGTTCGT
          1 GAACACTTAAATGAACAATAAACGAGCCTGTTCGT

                                  *            
        176 GAACACTTAAATGAACAATAAATGAGCCTGTTCGT
          1 GAACACTTAAATGAACAATAAACGAGCCTGTTCGT

                 
        211 GAACA
          1 GAACA

        216 TAAACGAACT


Statistics
Matches: 39,  Mismatches: 1, Indels: 0
        0.98            0.03        0.00

Matches are distributed among these distances:
  35   39  1.00

ACGTcount: A:0.41, C:0.19, G:0.17, T:0.23


Consensus pattern (35 bp):   
GAACACTTAAATGAACAATAAACGAGCCTGTTCGT

Found at i:1126 original size:29 final size:29

Alignment explanation


    Indices: 1084--1140  Score: 114
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       1074 TCAATCTTAG

                                         
       1084 CTACATAAATCAACTAGAATTGTCAAATT
          1 CTACATAAATCAACTAGAATTGTCAAATT

                                        
       1113 CTACATAAATCAACTAGAATTGTCAAAT
          1 CTACATAAATCAACTAGAATTGTCAAAT

       1141 CCTTAATTTC


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   28  1.00

ACGTcount: A:0.46, C:0.18, G:0.07, T:0.30


Consensus pattern (29 bp):   
CTACATAAATCAACTAGAATTGTCAAATT
Done.