Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009732.1 Corchorus olitorius cultivar O-4 contig09764, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2428
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25


Found at i:2179 original size:15 final size:14

Alignment explanation


    Indices: 2151--2185  Score: 54
    Period size: 15  Copynumber: 2.5  Consensus size: 14

       2141 GGATTGGGAT

                          
       2151 TTTG-AAATTGAAA
          1 TTTGAAAATTGAAA

                           
       2164 TTTGAAAATATGAAA
          1 TTTGAAAAT-TGAAA

                   
       2179 TTTGAAA
          1 TTTGAAA

       2186 CCGAGCGCAG


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  13    4  0.20
  14    4  0.20
  15   12  0.60

ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37


Consensus pattern (14 bp):   
TTTGAAAATTGAAA
Done.