Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009734.1 Corchorus olitorius cultivar O-4 contig09766, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1947
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28


Found at i:601 original size:15 final size:15

Alignment explanation


    Indices: 581--619  Score: 78
    Period size: 15  Copynumber: 2.6  Consensus size: 15

        571 AACTTGAGGT

                           
        581 GGATGGCGTGGAGCA
          1 GGATGGCGTGGAGCA

                           
        596 GGATGGCGTGGAGCA
          1 GGATGGCGTGGAGCA

                     
        611 GGATGGCGT
          1 GGATGGCGT

        620 TGTTGGCCAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   24  1.00

ACGTcount: A:0.18, C:0.13, G:0.54, T:0.15


Consensus pattern (15 bp):   
GGATGGCGTGGAGCA
Done.