Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009738.1 Corchorus olitorius cultivar O-4 contig09770, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2384
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34


Found at i:1810 original size:28 final size:28

Alignment explanation


    Indices: 1770--1835  Score: 132
    Period size: 28  Copynumber: 2.4  Consensus size: 28

       1760 CTTCCCTCCA

                                        
       1770 TGTCGAAACGTTCGGGTCCGGGGAACCC
          1 TGTCGAAACGTTCGGGTCCGGGGAACCC

                                        
       1798 TGTCGAAACGTTCGGGTCCGGGGAACCC
          1 TGTCGAAACGTTCGGGTCCGGGGAACCC

                      
       1826 TGTCGAAACG
          1 TGTCGAAACG

       1836 ACGTTGGAAA


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   38  1.00

ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18


Consensus pattern (28 bp):   
TGTCGAAACGTTCGGGTCCGGGGAACCC
Done.