Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009739.1 Corchorus olitorius cultivar O-4 contig09771, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3240
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.31


Found at i:2095 original size:11 final size:11

Alignment explanation


    Indices: 2079--2104  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

       2069 AACAATTTTA

                       
       2079 TCGCAAGTATG
          1 TCGCAAGTATG

                       
       2090 TCGCAAGTATG
          1 TCGCAAGTATG

                
       2101 TCGC
          1 TCGC

       2105 TTATGCTGTC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27


Consensus pattern (11 bp):   
TCGCAAGTATG
Done.