Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009741.1 Corchorus olitorius cultivar O-4 contig09773, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2606
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33


Found at i:1756 original size:11 final size:11

Alignment explanation


    Indices: 1742--1779  Score: 51
    Period size: 11  Copynumber: 3.5  Consensus size: 11

       1732 ATTCATAACA

                       
       1742 AATTTATAATT
          1 AATTTATAATT

                       
       1753 AATTTATAATT
          1 AATTTATAATT

                        
       1764 -ATTTAATAATT
          1 AATTT-ATAATT

            *    
       1775 TATTT
          1 AATTT

       1780 TATATAGAAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
  10    4  0.16
  11   17  0.68
  12    4  0.16

ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58


Consensus pattern (11 bp):   
AATTTATAATT
Done.