Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009747.1 Corchorus olitorius cultivar O-4 contig09779, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4818
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34


Found at i:971 original size:2 final size:2

Alignment explanation


    Indices: 966--992  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

        956 TATATGCATG

                                                    
        966 TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA T

        993 CTTTTATAAG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:2717 original size:7 final size:7

Alignment explanation


    Indices: 2707--2731  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

       2697 AAAAAAACTA

                   
       2707 TAAATAC
          1 TAAATAC

                   
       2714 TAAATAC
          1 TAAATAC

                   
       2721 TAAATAC
          1 TAAATAC

                
       2728 TAAA
          1 TAAA

       2732 GATATGCATT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28


Consensus pattern (7 bp):   
TAAATAC
Done.