Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009752.1 Corchorus olitorius cultivar O-4 contig09784, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2624
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.31


Found at i:2030 original size:33 final size:33

Alignment explanation


    Indices: 1988--2053  Score: 123
    Period size: 33  Copynumber: 2.0  Consensus size: 33

       1978 CTTTTACAAA

                                             
       1988 AATAAATCTTCTCACAAATAAAAAAAGTTAAGG
          1 AATAAATCTTCTCACAAATAAAAAAAGTTAAGG

                           *                 
       2021 AATAAATCTTCTCACGAATAAAAAAAGTTAAGG
          1 AATAAATCTTCTCACAAATAAAAAAAGTTAAGG

       2054 TTACAAGGTG


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  33   32  1.00

ACGTcount: A:0.53, C:0.12, G:0.11, T:0.24


Consensus pattern (33 bp):   
AATAAATCTTCTCACAAATAAAAAAAGTTAAGG
Done.