Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009758.1 Corchorus olitorius cultivar O-4 contig09790, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7289
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:128 original size:13 final size:14

Alignment explanation


    Indices: 110--144  Score: 54
    Period size: 13  Copynumber: 2.6  Consensus size: 14

        100 GTCGGGTTTT

                          
        110 AGTCAGTTTGTT-G
          1 AGTCAGTTTGTTCG

                     *    
        123 AGTCAGTTTTTTCG
          1 AGTCAGTTTGTTCG

                    
        137 AGTCAGTT
          1 AGTCAGTT

        145 AGTGTTAACT


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  13   11  0.55
  14    9  0.45

ACGTcount: A:0.17, C:0.11, G:0.26, T:0.46


Consensus pattern (14 bp):   
AGTCAGTTTGTTCG

Found at i:5958 original size:2 final size:2

Alignment explanation


    Indices: 5951--5976  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

       5941 TTCTTGGTAC

                                                  
       5951 TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA

       5977 CAGTGTTGGT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.