Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000977.1 Corchorus olitorius cultivar O-4 contig00977, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 628

Length: 1047
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41


Found at i:339 original size:15 final size:15

Alignment explanation


    Indices: 319--352  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        309 AGGATAGAAA

                           
        319 ATTGTTTGTTTCTGG
          1 ATTGTTTGTTTCTGG

                   *   *   
        334 ATTGTTTTTTTTTGG
          1 ATTGTTTGTTTCTGG

                
        349 ATTG
          1 ATTG

        353 ATTATTCCCC


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.09, C:0.03, G:0.24, T:0.65


Consensus pattern (15 bp):   
ATTGTTTGTTTCTGG
Done.