Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009774.1 Corchorus olitorius cultivar O-4 contig09806, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3188
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33


Found at i:1862 original size:13 final size:13

Alignment explanation


    Indices: 1844--1870  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       1834 CTTTATAACC

                         
       1844 TCATAAATCATAT
          1 TCATAAATCATAT

                         
       1857 TCATAAATCATAT
          1 TCATAAATCATAT

             
       1870 T
          1 T

       1871 TATTATATTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41


Consensus pattern (13 bp):   
TCATAAATCATAT
Done.