Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009775.1 Corchorus olitorius cultivar O-4 contig09807, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3488
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37


Found at i:1490 original size:14 final size:14

Alignment explanation


    Indices: 1471--1497  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

       1461 AATTAAAGTA

                          
       1471 TTGAAAATTTTCAT
          1 TTGAAAATTTTCAT

                         
       1485 TTGAAAATTTTCA
          1 TTGAAAATTTTCA

       1498 ATGGTTTATC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.37, C:0.07, G:0.07, T:0.48


Consensus pattern (14 bp):   
TTGAAAATTTTCAT

Found at i:3250 original size:23 final size:23

Alignment explanation


    Indices: 3220--3267  Score: 78
    Period size: 23  Copynumber: 2.1  Consensus size: 23

       3210 ATTTGTAATT

                               *   
       3220 ACCTTTATTATTGACGAAATGAA
          1 ACCTTTATTATTGACGAAAGGAA

                          *        
       3243 ACCTTTATTATTGAGGAAAGGAA
          1 ACCTTTATTATTGACGAAAGGAA

              
       3266 AC
          1 AC

       3268 TAAAGTATTG


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31


Consensus pattern (23 bp):   
ACCTTTATTATTGACGAAAGGAA
Done.