Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009781.1 Corchorus olitorius cultivar O-4 contig09813, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8431
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31


Found at i:6199 original size:21 final size:21

Alignment explanation


    Indices: 6161--6201  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       6151 AAATAGTAGG

                        **       
       6161 AAAGATTGAAAATGGAAGAAA
          1 AAAGATTGAAAAAAGAAGAAA

                *               
       6182 AAAGGTTGAAAAAAGAAGAA
          1 AAAGATTGAAAAAAGAAGAA

       6202 GAGAGAGAGA


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.63, C:0.00, G:0.24, T:0.12


Consensus pattern (21 bp):   
AAAGATTGAAAAAAGAAGAAA
Done.