Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009782.1 Corchorus olitorius cultivar O-4 contig09814, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9122

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
371--781
205
2.0
201
94
1
714
43
8
10
36
1.71
1422--1518
45
2.2
45
88
1
142
40
19
4
36
1.71
4382--4556
22
7.9
22
71
16
112
37
8
16
37
1.79
4379--4555
66
2.7
66
81
8
189
36
8
17
37
1.80
4379--4588
44
4.7
46
76
12
174
36
8
17
38
1.80
4597--5534
22
42.5
22
67
17
262
38
9
16
35
1.81
5222--5380
82
1.9
83
82
3
196
39
8
17
33
1.81
6112--6143
9
3.6
9
95
0
55
9
3
56
31
1.47
6112--6150
18
2.2
18
85
0
51
12
5
53
28
1.60
7047--7090
16
2.7
16
83
16
63
38
2
0
59
1.10
7067--7104
20
2.0
20
90
10
62
36
5
0
57
1.21

Tables:   1

The End!